Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lptf/lptg family permease | IZT61_20515 | P0ADC7 | - | 5043453 - 5044556 | 41763.3 |
| trna guanosine(34) transglycosylase tgt | IZT61_20520 | Q8RAM9 | - | 5044558 - 5045688 | 42706.6 |
| glycosyltransferase | IZT61_20525 | Q8XAR5 | + | 5045989 - 5047089 | 42146.7 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | IZT61_20530 | Q11VU7 | + | 5047109 - 5047744 | 23985.0 |
| gliding motility-associated c-terminal domain-containing protein | IZT61_20535 | Not Available | - | 5047753 - 5049297 | 57226.9 |
| hypothetical protein | IZT61_20540 | Not Available | - | 5049352 - 5049660 | 11853.5 |
| blai/meci/copy family transcriptional regulator | IZT61_20545 | P68261 | - | 5049657 - 5050031 | 14287.4 |
| hypothetical protein | IZT61_20550 | Not Available | + | 5050288 - 5050995 | 26844.2 |
| m28 family peptidase | IZT61_20555 | P10423 | - | 5051144 - 5052094 | 34823.5 |
| type ii toxin-antitoxin system vapc family toxin | IZT61_20560 | Not Available | - | 5052099 - 5052512 | 15713.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.