Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| m20/m25/m40 family metallo-hydrolase | IZT61_20415 | Q17QK3 | - | 5019262 - 5020809 | 56647.4 |
| acetyl-coa carboxylase carboxyltransferase subunit beta | IZT61_20420 | C6XT67 | - | 5021051 - 5021896 | 31206.0 |
| class ii fructose-bisphosphate aldolase | IZT61_20425 | P44429 | + | 5022395 - 5023474 | 39731.1 |
| low affinity iron permease family protein | IZT61_20430 | Not Available | + | 5023619 - 5024101 | 18056.6 |
| gnat family n-acetyltransferase | IZT61_20435 | Q6GI30 | + | 5024098 - 5024520 | 16059.2 |
| hydroxymethylglutaryl-coa lyase | IZT61_20440 | D4A5C3 | - | 5024654 - 5025514 | 31470.9 |
| methylglyoxal synthase | IZT61_20445 | Q9CNN3 | - | 5025701 - 5026150 | 16758.3 |
| nad(p)/fad-dependent oxidoreductase | IZT61_20450 | P95160 | - | 5026161 - 5027495 | 49305.0 |
| protein translocase subunit secdf | IZT61_20455 | D0MIN4 | - | 5028186 - 5031167 | 107829.0 |
| dihydrofolate reductase | IZT61_20460 | P11045 | - | 5031580 - 5032074 | 18571.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.