Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate kinase | IZT61_20215 | P35850 | + | 4970243 - 4971730 | 53904.3 |
| xylose isomerase | IZT61_20220 | Q4UNZ4 | + | 4971743 - 4973074 | 50112.6 |
| laci family dna-binding transcriptional regulator | IZT61_20225 | P46828 | + | 4973150 - 4974190 | 37772.6 |
| pas domain s-box protein | IZT61_20230 | Q45614 | - | 4974624 - 4976195 | 57968.7 |
| pas domain-containing sensor histidine kinase | IZT61_20235 | Q45614 | + | 4976560 - 4977681 | 42176.7 |
| hypothetical protein | IZT61_20240 | Not Available | - | 4977685 - 4977882 | 7188.73 |
| response regulator | IZT61_20245 | Q55890 | - | 4977951 - 4978307 | 13169.1 |
| glycoside hydrolase family 43 protein | IZT61_20250 | A7LXT8 | - | 4978716 - 4979663 | 35593.4 |
| tonb-dependent receptor | IZT61_20255 | Q8A1G1 | - | 4979949 - 4982591 | 98987.2 |
| hypothetical protein | IZT61_20260 | T2KPJ7 | - | 4983101 - 4985173 | 79349.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.