Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-n-acetylhexosaminidase | IZT61_20165 | P49008 | - | 4944902 - 4946566 | 63296.9 |
| 30s ribosomal protein s1 | IZT61_20170 | Q9Z8M3 | - | 4947096 - 4949030 | 71504.1 |
| tonb-dependent receptor | IZT61_20175 | T2KPJ3 | + | 4950037 - 4953258 | 119153.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_20180 | T2KPM5 | + | 4953321 - 4955096 | 66315.4 |
| endonuclease/exonuclease/phosphatase family protein | IZT61_20185 | Q5UQW5 | + | 4955303 - 4956142 | 31520.6 |
| glycoside hydrolase family 32 protein | IZT61_20190 | P05656 | + | 4956560 - 4958206 | 62986.4 |
| hypothetical protein | IZT61_20195 | Not Available | + | 4961390 - 4963807 | 78105.1 |
| hypothetical protein | IZT61_20200 | Not Available | + | 4963838 - 4967284 | 118245.0 |
| gliding motility-associated c-terminal domain-containing protein | IZT61_20205 | Not Available | + | 4967386 - 4968681 | 47363.5 |
| type ix secretion system membrane protein porp/sprf | IZT61_20210 | Not Available | + | 4968734 - 4969705 | 35879.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.