Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pepsy domain-containing protein | IZT61_20115 | Not Available | + | 4929891 - 4931543 | 63317.6 |
| tonb-dependent receptor | IZT61_20120 | Q8DD41 | + | 4931838 - 4934177 | 86771.3 |
| duf4374 domain-containing protein | IZT61_20125 | Not Available | + | 4934179 - 4935423 | 44861.6 |
| tonb-dependent receptor | IZT61_20130 | Not Available | - | 4936025 - 4937722 | 63126.6 |
| tetratricopeptide repeat protein | IZT61_20135 | Not Available | - | 4937727 - 4940750 | 115753.0 |
| hypothetical protein | IZT61_20140 | Not Available | + | 4940894 - 4941070 | 6465.77 |
| aspartate carbamoyltransferase catalytic subunit | IZT61_20145 | A6H0I8 | - | 4941119 - 4942048 | 34241.9 |
| bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase pyrr | IZT61_20150 | A9A079 | - | 4942052 - 4942600 | 20830.2 |
| type i methionyl aminopeptidase | IZT61_20155 | O34484 | - | 4942671 - 4943435 | 27810.9 |
| thiol-disulfide oxidoreductase dcc family protein | IZT61_20160 | P40761 | + | 4943502 - 4943906 | 15713.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.