Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf11 domain-containing protein | IZT61_20015 | P29579 | - | 4889570 - 4902481 | 439022.0 |
| helix-turn-helix transcriptional regulator | IZT61_20020 | O31943 | + | 4903387 - 4903686 | 11404.9 |
| acyl-acp desaturase | IZT61_20025 | Q9LF04 | + | 4903974 - 4904954 | 37723.3 |
| pyrroloquinoline quinone biosynthesis protein pqqb | IZT61_20030 | A9W3R2 | - | 4905585 - 4906505 | 35214.9 |
| methylmalonyl-coa mutase family protein | IZT61_20035 | Q5KUG0 | - | 4906646 - 4910044 | 126925.0 |
| alkaline phosphatase family protein | IZT61_20040 | Q55320 | - | 4910327 - 4911985 | 61588.8 |
| glycerophosphodiester phosphodiesterase family protein | IZT61_20045 | P9WMU2 | - | 4912550 - 4913512 | 36313.8 |
| pkd domain-containing protein | IZT61_20050 | Q9JL56 | - | 4913560 - 4914732 | 42974.1 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_20055 | T2KPM5 | - | 4915106 - 4916449 | 49547.4 |
| tonb-dependent receptor | IZT61_20060 | T2KPJ3 | - | 4916508 - 4919666 | 115612.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.