Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lyse family transporter | IZT61_19715 | P94381 | - | 4813141 - 4813767 | 23151.2 |
| mfs transporter | IZT61_19720 | Q2YIJ8 | + | 4813910 - 4815346 | 51193.4 |
| dcmp deaminase family protein | IZT61_19725 | O22000 | + | 4815411 - 4815869 | 16387.5 |
| prevent-host-death protein | IZT61_19730 | Not Available | + | 4816084 - 4816329 | 8858.81 |
| glutamine-hydrolyzing gmp synthase | IZT61_19735 | Q11WK3 | + | 4816393 - 4817922 | 56343.5 |
| amino acid abc transporter substrate-binding protein | IZT61_19740 | Not Available | + | 4818035 - 4819288 | 47281.6 |
| rsmb/nop family class i sam-dependent rna methyltransferase | IZT61_19745 | B5XNC2 | + | 4819418 - 4820581 | 44216.1 |
| marc family protein | IZT61_19750 | Q8K9Q4 | - | 4821033 - 4821599 | 20718.4 |
| porin | IZT61_19755 | Not Available | - | 4821672 - 4822904 | 46190.3 |
| amino acid permease | IZT61_19760 | Q797A7 | - | 4823098 - 4824555 | 51888.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.