Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| kup/hak/kt family potassium transporter | IZT61_19615 | Q11PK1 | + | 4787259 - 4789235 | 73604.5 |
| amino acid permease | IZT61_19620 | O07576 | - | 4789671 - 4791620 | 70933.6 |
| mfs transporter | IZT61_19625 | P28246 | + | 4792285 - 4793508 | 44971.6 |
| m3 family oligoendopeptidase | IZT61_19630 | O31605 | - | 4793880 - 4795586 | 65928.0 |
| ubia family prenyltransferase | IZT61_19635 | Q87KM9 | - | 4795691 - 4796548 | 32232.1 |
| yiha family ribosome biogenesis gtp-binding protein | IZT61_19640 | B2RL89 | - | 4796709 - 4797332 | 23612.5 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | IZT61_19645 | Q5LH04 | + | 4797813 - 4798544 | 27496.1 |
| outer membrane beta-barrel protein | IZT61_19650 | Not Available | + | 4798541 - 4799341 | 30331.3 |
| sdr family oxidoreductase | IZT61_19655 | P69935 | + | 4799435 - 4800196 | 27925.8 |
| gatb/yqey domain-containing protein | IZT61_19660 | P54464 | + | 4800274 - 4800720 | 16395.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.