Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family efflux transporter periplasmic adaptor subunit | IZT61_19565 | P55125 | + | 4777740 - 4779029 | 49306.4 |
| hypothetical protein | IZT61_19570 | Not Available | - | 4779117 - 4779554 | 17031.0 |
| hypothetical protein | IZT61_19575 | Not Available | - | 4779636 - 4780292 | 24526.6 |
| sigma-70 family rna polymerase sigma factor | IZT61_19580 | P44790 | - | 4780323 - 4780883 | 21958.3 |
| transketolase family protein | IZT61_19585 | Q58092 | - | 4781112 - 4782068 | 34477.7 |
| transketolase | IZT61_19590 | Q58094 | - | 4782194 - 4783039 | 30777.5 |
| thioredoxin-dependent thiol peroxidase | IZT61_19595 | Q83CY8 | - | 4783097 - 4783561 | 17154.3 |
| m23 family metallopeptidase | IZT61_19600 | P44693 | - | 4784048 - 4785781 | 64120.2 |
| fumarylacetoacetate hydrolase family protein | IZT61_19605 | Q8R0F8 | - | 4785785 - 4786396 | 23077.7 |
| t9ss type a sorting domain-containing protein | IZT61_19610 | Not Available | - | 4786549 - 4787028 | 17535.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.