Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hd domain-containing protein | IZT61_19465 | Q9RV39 | - | 4757342 - 4758748 | 53401.6 |
| threonylcarbamoyl-amp synthase | IZT61_19470 | Q3IDH7 | - | 4759016 - 4759582 | 20912.2 |
| glpgli family protein | IZT61_19475 | Not Available | + | 4759676 - 4760434 | 29178.2 |
| duf4136 domain-containing protein | IZT61_19480 | Not Available | + | 4760594 - 4761148 | 20759.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | IZT61_19485 | Q6F9A5 | - | 4761284 - 4762102 | 29663.1 |
| rna-binding s4 domain-containing protein | IZT61_19490 | P44754 | + | 4762261 - 4762665 | 15337.4 |
| ecsc family protein | IZT61_19495 | P55341 | - | 4762662 - 4763435 | 29563.1 |
| nucleoside deaminase | IZT61_19500 | O34598 | - | 4763604 - 4764083 | 17600.1 |
| omph family outer membrane protein | IZT61_19505 | Not Available | - | 4764150 - 4764749 | 22376.2 |
| dna topoisomerase (atp-hydrolyzing) subunit b | IZT61_19510 | P05652 | + | 4765281 - 4767239 | 72258.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.