Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | IZT61_19115 | P75093 | + | 4681493 - 4684873 | 129796.0 |
| sdr family oxidoreductase | IZT61_19120 | P0AD13 | - | 4684967 - 4685767 | 29276.9 |
| thymidine kinase | IZT61_19125 | Q64YL9 | - | 4685978 - 4686559 | 21342.7 |
| hypothetical protein | IZT61_19130 | Not Available | + | 4686681 - 4687856 | 44127.3 |
| rod shape-determining protein roda | IZT61_19135 | O83514 | - | 4688413 - 4689675 | 46733.6 |
| penicillin-binding protein 2 | IZT61_19140 | P0AD67 | - | 4689677 - 4691686 | 74641.1 |
| rod shape-determining protein mred | IZT61_19145 | Not Available | - | 4691686 - 4692201 | 19692.8 |
| rod shape-determining protein mrec | IZT61_19150 | Q8Y6Y4 | - | 4692194 - 4693033 | 31141.9 |
| rod shape-determining protein | IZT61_19155 | Q01465 | - | 4693115 - 4694137 | 36751.0 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | IZT61_19160 | Q8A155 | - | 4694384 - 4695910 | 55390.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.