Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_18965 | P74892 | + | 4653942 - 4654538 | 22039.0 |
| 30s ribosomal protein s6 | IZT61_18970 | A6KWD7 | + | 4654843 - 4655199 | 13420.2 |
| 30s ribosomal protein s18 | IZT61_18975 | A6LIX8 | + | 4655199 - 4655462 | 10240.7 |
| 50s ribosomal protein l9 | IZT61_18980 | Q11RW8 | + | 4655476 - 4655919 | 16073.5 |
| sdr family oxidoreductase | IZT61_18985 | P14802 | - | 4655989 - 4656687 | 24827.8 |
| monofunctional biosynthetic peptidoglycan transglycosylase | IZT61_18990 | Q3K584 | + | 4656800 - 4657522 | 27882.5 |
| type ii toxin-antitoxin system higb family toxin | IZT61_18995 | Not Available | + | 4657809 - 4657901 | 3621.24 |
| gnat family n-acetyltransferase | IZT61_19000 | O31513 | + | 4658121 - 4658630 | 19735.5 |
| hypothetical protein | IZT61_19005 | Not Available | + | 4658845 - 4659093 | 9347.37 |
| fic family protein | IZT61_19010 | Q7DDR9 | + | 4659232 - 4659789 | 21718.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.