Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family oxidoreductase | IZT61_01860 | A7ZAH5 | - | 427723 - 428805 | 39877.4 |
| gfo/idh/moca family oxidoreductase | IZT61_01865 | A0KV43 | - | 428911 - 430362 | 53641.4 |
| hypothetical protein | IZT61_01870 | Not Available | + | 430402 - 430590 | 6922.69 |
| duf1080 domain-containing protein | IZT61_01875 | Not Available | - | 430631 - 434038 | 123119.0 |
| gfo/idh/moca family oxidoreductase | IZT61_01880 | B5F3F4 | - | 434078 - 435358 | 47595.0 |
| glutamate synthase subunit beta | IZT61_01885 | P9WN18 | - | 436001 - 437467 | 53437.2 |
| glutamate synthase large subunit | IZT61_01890 | P55037 | - | 437471 - 441970 | 164484.0 |
| Ncrna_class:srp_rna | Not Available | Not Available | + | 442552 - 442651 | Not Available |
| fructose-6-phosphate aldolase | IZT61_01900 | Q11S31 | + | 442744 - 443403 | 23241.2 |
| had family hydrolase | IZT61_01905 | P46452 | - | 443878 - 444384 | 18914.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.