Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_18915 | Not Available | - | 4642886 - 4643506 | 23592.7 |
| nadp-dependent isocitrate dehydrogenase | IZT61_18920 | P16100 | + | 4643864 - 4646083 | 79824.9 |
| hypothetical protein | IZT61_18925 | Not Available | - | 4646237 - 4646671 | 16948.3 |
| phospholipase d family protein | IZT61_18930 | Not Available | - | 4647138 - 4647875 | 28574.0 |
| diguanylate cyclase | IZT61_18935 | Not Available | - | 4648177 - 4648980 | 30877.3 |
| nuclear transport factor 2 family protein | IZT61_18940 | Not Available | - | 4649217 - 4649552 | 12987.3 |
| mazg-like protein | IZT61_18945 | Not Available | - | 4649564 - 4649884 | 12556.0 |
| hypothetical protein | IZT61_18950 | Not Available | + | 4650254 - 4650679 | 15928.3 |
| dna polymerase iii subunit gamma/tau | IZT61_18955 | P09122 | - | 4650855 - 4652705 | 68980.1 |
| helix-turn-helix domain-containing protein | IZT61_18960 | P96660 | - | 4652897 - 4653769 | 33098.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.