Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | IZT61_18815 | Q4L3L8 | + | 4609383 - 4610327 | 35583.5 |
| yebc/pmpr family dna-binding transcriptional regulator | IZT61_18820 | A6GXW2 | + | 4610627 - 4611355 | 27283.1 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_18825 | T2KNB8 | - | 4611486 - 4613336 | 69557.4 |
| tonb-dependent receptor | IZT61_18830 | T2KM18 | - | 4613359 - 4616742 | 123743.0 |
| prolyl oligopeptidase family serine peptidase | IZT61_18835 | Q3UFF7 | - | 4617177 - 4617959 | 29617.4 |
| beta-glucosidase bglx | IZT61_18840 | P33363 | - | 4618385 - 4620682 | 83615.5 |
| discoidin domain-containing protein | IZT61_18845 | Not Available | - | 4620710 - 4622455 | 66435.4 |
| beta-glucosidase | IZT61_18850 | A6LGF6 | - | 4622703 - 4624061 | 51656.9 |
| ig-like domain-containing protein | IZT61_18855 | A6LGF6 | - | 4624077 - 4625753 | 61906.4 |
| lamg domain-containing protein | IZT61_18860 | Not Available | - | 4625807 - 4626694 | 32505.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.