Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | IZT61_18665 | Q2EHL7 | + | 4572622 - 4574058 | 53031.8 |
| efflux rnd transporter periplasmic adaptor subunit | IZT61_18670 | P58411 | + | 4574183 - 4575526 | 47893.1 |
| glycerol-3-phosphate dehydrogenase | IZT61_18675 | A7Z635 | + | 4575888 - 4576868 | 36210.9 |
| hypothetical protein | IZT61_18680 | Not Available | - | 4577147 - 4577431 | 10788.0 |
| hypothetical protein | IZT61_18685 | Not Available | - | 4577974 - 4578285 | 12004.4 |
| phosphoheptose isomerase | IZT61_18690 | P26340 | + | 4578461 - 4578958 | 18872.0 |
| acyl-coa desaturase | IZT61_18695 | Q9LMI3 | + | 4579091 - 4579819 | 29301.7 |
| dmt family transporter | IZT61_18700 | A8F902 | + | 4579958 - 4580251 | 11699.8 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | IZT61_18705 | P51831 | + | 4580354 - 4581097 | 26344.8 |
| l,d-transpeptidase family protein | IZT61_18710 | P0AAA0 | - | 4581313 - 4582047 | 27765.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.