Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | IZT61_18615 | P29820 | + | 4562338 - 4562793 | 16509.5 |
| duf5606 domain-containing protein | IZT61_18620 | Not Available | + | 4562962 - 4563504 | 19340.2 |
| txe/yoeb family addiction module toxin | IZT61_18625 | P69348 | - | 4563770 - 4564045 | 11033.4 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | IZT61_18630 | P69347 | - | 4564063 - 4564323 | 9877.58 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | IZT61_18635 | A6LDQ1 | - | 4564471 - 4564944 | 18033.1 |
| dna mismatch repair protein muts | IZT61_18640 | F4JP48 | + | 4565077 - 4566891 | 67949.6 |
| beta-glucosidase | IZT61_18645 | Q08638 | + | 4567073 - 4568410 | 50434.1 |
| duf2007 domain-containing protein | IZT61_18650 | Not Available | + | 4568565 - 4568996 | 15905.8 |
| aconitate hydratase | IZT61_18655 | Q54XS2 | - | 4569210 - 4571489 | 81886.9 |
| polysaccharide deacetylase family protein | IZT61_18660 | Q81AF4 | - | 4571891 - 4572547 | 25221.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.