Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_18515 | Not Available | + | 4535658 - 4536002 | 13126.1 |
| sulp family inorganic anion transporter | IZT61_18520 | O06984 | + | 4536142 - 4537752 | 58007.1 |
| carbonate dehydratase | IZT61_18525 | Q5BCC5 | + | 4537759 - 4538415 | 24040.9 |
| hypothetical protein | IZT61_18530 | Not Available | - | 4538467 - 4538727 | 9443.3 |
| glycoside hydrolase family 95 protein | IZT61_18535 | Q8L7W8 | - | 4538830 - 4541274 | 90815.2 |
| l-rhamnose mutarotase | IZT61_18540 | Q88S50 | - | 4541320 - 4541655 | 12898.3 |
| alpha-l-fucosidase | IZT61_18545 | P49713 | - | 4541802 - 4543106 | 49517.6 |
| sodium:solute symporter | IZT61_18550 | P11170 | - | 4543564 - 4545216 | 60391.2 |
| mandelate racemase | IZT61_18555 | Q7L5Y1 | - | 4545235 - 4546452 | 44948.9 |
| sdr family oxidoreductase | IZT61_18560 | Q9BPX1 | - | 4546659 - 4547426 | 27639.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.