Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| inorganic diphosphatase | IZT61_18465 | Q8TVE2 | - | 4525235 - 4526038 | 30215.6 |
| hypothetical protein | IZT61_18470 | Not Available | - | 4526050 - 4526727 | 25459.4 |
| cina family protein | IZT61_18475 | A5D2R7 | - | 4526733 - 4527221 | 17467.2 |
| ferritin-like domain-containing protein | IZT61_18480 | P21362 | + | 4527476 - 4528030 | 20459.5 |
| catalase | IZT61_18485 | P30266 | + | 4528046 - 4530253 | 81785.7 |
| sdr family oxidoreductase | IZT61_18490 | Q8CN40 | - | 4530948 - 4531748 | 28955.0 |
| sdr family oxidoreductase | IZT61_18495 | O32291 | - | 4531829 - 4532800 | 34550.3 |
| hypothetical protein | IZT61_18500 | Not Available | - | 4532905 - 4533093 | 7045.72 |
| hypothetical protein | IZT61_18505 | Not Available | - | 4533126 - 4533332 | 7202.4 |
| acyl-coa carboxylase subunit beta | IZT61_18510 | Q3J4E3 | - | 4533499 - 4535040 | 56258.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.