Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | IZT61_18365 | Q5HLK6 | - | 4501405 - 4502187 | 29210.1 |
| duf1349 domain-containing protein | IZT61_18370 | P40893 | + | 4502262 - 4502909 | 24823.8 |
| glycosyltransferase family 2 protein | IZT61_18375 | A0R5Z2 | - | 4502930 - 4503838 | 34957.2 |
| hypothetical protein | IZT61_18380 | Not Available | + | 4503823 - 4504026 | 7287.08 |
| sigma-70 family rna polymerase sigma factor | IZT61_18385 | Not Available | + | 4504620 - 4505246 | 24412.4 |
| fecr domain-containing protein | IZT61_18390 | Not Available | + | 4505315 - 4506337 | 38996.6 |
| susc/raga family tonb-linked outer membrane protein | IZT61_18395 | T2KPJ3 | + | 4506410 - 4509823 | 123584.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_18400 | Not Available | + | 4509834 - 4511366 | 56504.4 |
| family 20 glycosylhydrolase | IZT61_18405 | P49008 | + | 4511709 - 4513991 | 85802.4 |
| trap transporter large permease subunit | IZT61_18410 | P39835 | + | 4513993 - 4515309 | 46629.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.