Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | IZT61_18265 | Q58D55 | + | 4479189 - 4481690 | 95409.3 |
| alpha-l-fucosidase | IZT61_18270 | Q8L7W8 | + | 4481687 - 4483963 | 85989.7 |
| chondroitinase | IZT61_18275 | Q59288 | + | 4483981 - 4486086 | 79051.5 |
| glycoside hydrolase family 88 protein | IZT61_18280 | T2KLZ3 | + | 4486110 - 4487297 | 45134.4 |
| duf2264 domain-containing protein | IZT61_18285 | Not Available | + | 4487314 - 4488549 | 46629.2 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | IZT61_18290 | T2KN98 | + | 4488910 - 4489749 | 31325.1 |
| duf4861 family protein | IZT61_18295 | T2KN67 | + | 4490177 - 4491307 | 42160.6 |
| sdr family oxidoreductase | IZT61_18300 | Q15SS0 | + | 4491326 - 4492093 | 26954.2 |
| carbonic anhydrase | IZT61_18305 | Q5BCC5 | - | 4492849 - 4493478 | 23865.7 |
| nad(p)h-dependent oxidoreductase | IZT61_18310 | P96726 | - | 4493497 - 4494036 | 20866.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.