Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| translocation/assembly module tamb domain-containing protein | IZT61_18165 | Not Available | - | 4446196 - 4450626 | 165056.0 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | IZT61_18170 | A0M1X3 | + | 4450702 - 4451706 | 36405.8 |
| hypothetical protein | IZT61_18175 | Not Available | + | 4451827 - 4452024 | 7156.15 |
| hypothetical protein | IZT61_18180 | Q5UPT6 | - | 4452090 - 4453364 | 48266.9 |
| recombinase reca | IZT61_18185 | Q11QM8 | - | 4453585 - 4454598 | 36271.8 |
| endonuclease iii | IZT61_18190 | Q4UK93 | - | 4454732 - 4455397 | 25114.6 |
| hypothetical protein | IZT61_18195 | Not Available | + | 4455648 - 4455848 | 7408.77 |
| mfs transporter | IZT61_18200 | P23910 | - | 4456011 - 4457207 | 42111.8 |
| hypothetical protein | IZT61_18205 | Not Available | - | 4457428 - 4457622 | 7243.55 |
| sigma-70 family rna polymerase sigma factor | IZT61_18210 | Q45585 | - | 4457713 - 4458297 | 22946.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.