Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphate aminotransferase family protein | IZT61_18065 | Q0P8H8 | - | 4423492 - 4424625 | 43449.4 |
| ntp transferase domain-containing protein | IZT61_18070 | Q0P8J8 | - | 4424625 - 4425365 | 28309.7 |
| licd family protein | IZT61_18075 | P14184 | - | 4425398 - 4426033 | 25139.2 |
| hypothetical protein | IZT61_18080 | Not Available | + | 4426455 - 4428128 | 63635.8 |
| peptidase domain-containing abc transporter | IZT61_18085 | P59852 | + | 4428270 - 4430486 | 82976.6 |
| hlyd family efflux transporter periplasmic adaptor subunit | IZT61_18090 | P16534 | + | 4430629 - 4431912 | 49078.1 |
| hypothetical protein | IZT61_18095 | Not Available | + | 4432660 - 4432908 | 9415.2 |
| hypothetical protein | IZT61_18100 | Not Available | - | 4433373 - 4433894 | 19590.9 |
| rna polymerase sigma factor | IZT61_18105 | A0QTP2 | + | 4434918 - 4435433 | 19873.2 |
| cold shock domain-containing protein | IZT61_18110 | Q5HPE0 | - | 4435479 - 4435718 | 8824.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.