Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | IZT61_17965 | P10311 | - | 4400039 - 4400641 | 22730.9 |
| hypothetical protein | IZT61_17970 | Not Available | - | 4400896 - 4401348 | 17111.3 |
| hypothetical protein | IZT61_17975 | Not Available | - | 4401397 - 4402965 | 58520.3 |
| hypothetical protein | IZT61_17980 | Not Available | + | 4403538 - 4403819 | 10643.7 |
| fad-dependent monooxygenase | IZT61_17985 | D3HKY4 | - | 4404187 - 4405440 | 46278.0 |
| helix-turn-helix domain-containing protein | IZT61_17990 | O87389 | + | 4405466 - 4406428 | 37181.5 |
| hypothetical protein | IZT61_17995 | Not Available | + | 4406690 - 4407004 | 11571.2 |
| duf3891 family protein | IZT61_18000 | Not Available | - | 4407182 - 4407505 | 12236.6 |
| duf2254 domain-containing protein | IZT61_18005 | P9WM35 | + | 4408006 - 4409229 | 46329.7 |
| cation:proton antiporter | IZT61_18010 | Q99271 | - | 4409350 - 4410579 | 44653.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.