Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_17915 | Not Available | + | 4388228 - 4388674 | 17064.6 |
| hypothetical protein | IZT61_17920 | Q5HPB7 | + | 4388910 - 4390253 | 51850.2 |
| hypothetical protein | IZT61_17925 | Not Available | + | 4390927 - 4392108 | 44197.6 |
| hypothetical protein | IZT61_17930 | Not Available | + | 4392108 - 4392887 | 29552.9 |
| tlpa family protein disulfide reductase | IZT61_17935 | Q73B22 | + | 4393210 - 4394394 | 45302.6 |
| helix-turn-helix transcriptional regulator | IZT61_17940 | P54722 | - | 4394544 - 4395461 | 35347.4 |
| sdr family nad(p)-dependent oxidoreductase | IZT61_17945 | Q9M2E2 | - | 4395522 - 4396295 | 27131.1 |
| dmt family transporter | IZT61_17950 | B8ECC6 | - | 4396516 - 4396827 | 11656.0 |
| atp-binding protein | IZT61_17955 | Not Available | - | 4397111 - 4399186 | 81517.6 |
| hypothetical protein | IZT61_17960 | Not Available | - | 4399539 - 4399826 | 11263.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.