Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | IZT61_17865 | Q9JVR5 | + | 4370717 - 4373083 | 88866.5 |
| hypothetical protein | IZT61_17870 | Not Available | - | 4373556 - 4374713 | 44537.6 |
| hypothetical protein | IZT61_17875 | Not Available | - | 4374716 - 4374934 | 8140.71 |
| response regulator | IZT61_17880 | Q8KIY1 | - | 4375718 - 4379401 | 137015.0 |
| response regulator transcription factor | IZT61_17885 | P13792 | - | 4380097 - 4380477 | 14213.4 |
| pas domain-containing protein | IZT61_17890 | Q6GGK7 | - | 4380666 - 4383668 | 111613.0 |
| rna polymerase sigma factor | IZT61_17895 | Q3IYV6 | - | 4383780 - 4384373 | 22938.0 |
| hypothetical protein | IZT61_17900 | Not Available | + | 4384945 - 4385787 | 30764.8 |
| hypothetical protein | IZT61_17905 | Not Available | + | 4386174 - 4386839 | 25984.3 |
| hypothetical protein | IZT61_17910 | Not Available | + | 4387481 - 4388227 | 28342.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.