Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_17815 | Not Available | + | 4361719 - 4362033 | 11978.0 |
| nuclear transport factor 2 family protein | IZT61_17820 | Not Available | + | 4362376 - 4362792 | 15884.1 |
| crp/fnr family transcriptional regulator | IZT61_17825 | Not Available | + | 4362889 - 4363476 | 22340.1 |
| hypothetical protein | IZT61_17830 | Not Available | + | 4363517 - 4364275 | 29191.2 |
| duf4180 domain-containing protein | IZT61_17835 | Not Available | + | 4364329 - 4364682 | 13266.8 |
| sumf1/egtb/pvdo family nonheme iron enzyme | IZT61_17840 | V9TSX0 | + | 4364711 - 4365358 | 25083.6 |
| hypothetical protein | IZT61_17845 | Not Available | - | 4365709 - 4366188 | 18226.1 |
| helix-turn-helix transcriptional regulator | IZT61_17850 | P54722 | - | 4366518 - 4367432 | 35160.3 |
| sdr family oxidoreductase | IZT61_17855 | P39315 | - | 4367530 - 4368399 | 32242.8 |
| s41 family peptidase | IZT61_17860 | P23648 | - | 4369209 - 4370231 | 37952.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.