Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| caspase family protein | IZT61_17765 | Not Available | + | 4345653 - 4349993 | 167376.0 |
| hypothetical protein | IZT61_17770 | Not Available | - | 4350074 - 4351966 | 73421.8 |
| hypothetical protein | IZT61_17775 | Not Available | - | 4351989 - 4352846 | 32949.6 |
| hypothetical protein | IZT61_17780 | Not Available | - | 4352889 - 4353899 | 39260.0 |
| tetratricopeptide repeat protein | IZT61_17785 | Not Available | - | 4353904 - 4354830 | 35652.3 |
| recombinase family protein | IZT61_17790 | P17867 | + | 4355478 - 4357172 | 65219.6 |
| yafy family transcriptional regulator | IZT61_17795 | O34920 | + | 4357571 - 4358302 | 27717.7 |
| voc family protein | IZT61_17800 | O07918 | + | 4358361 - 4358765 | 15063.1 |
| pas domain-containing sensor histidine kinase | IZT61_17805 | Q9HWR3 | - | 4359573 - 4360676 | 41097.4 |
| alpha/beta hydrolase | IZT61_17810 | O07015 | - | 4360691 - 4361485 | 29448.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.