Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | IZT61_17715 | T2KMI3 | - | 4332357 - 4335377 | 113138.0 |
| sdr family oxidoreductase | IZT61_17720 | O67610 | + | 4336479 - 4337225 | 27036.3 |
| zinc-binding dehydrogenase | IZT61_17725 | P27867 | + | 4337263 - 4338312 | 38367.7 |
| hypothetical protein | IZT61_17730 | Not Available | - | 4338628 - 4338798 | 5930.3 |
| hypothetical protein | IZT61_17735 | Not Available | + | 4339930 - 4340169 | 9210.1 |
| hypothetical protein | IZT61_17740 | P0DUD6 | - | 4340668 - 4341681 | 38105.3 |
| hypothetical protein | IZT61_17745 | Not Available | - | 4341756 - 4342853 | 42182.6 |
| hypothetical protein | IZT61_17750 | Not Available | + | 4343033 - 4343482 | 17401.2 |
| hypothetical protein | IZT61_17755 | Not Available | + | 4343557 - 4344210 | 25609.0 |
| hypothetical protein | IZT61_17760 | Not Available | + | 4344317 - 4345516 | 46358.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.