Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4983 domain-containing protein | IZT61_17665 | Not Available | - | 4316430 - 4318112 | 60391.3 |
| discoidin domain-containing protein | IZT61_17670 | Q6QR59 | - | 4318130 - 4320064 | 71466.9 |
| duf4983 domain-containing protein | IZT61_17675 | Not Available | - | 4320072 - 4321850 | 64528.0 |
| duf5008 domain-containing protein | IZT61_17680 | Not Available | - | 4321869 - 4323557 | 61264.2 |
| hypothetical protein | IZT61_17685 | Not Available | - | 4323590 - 4324333 | 27861.6 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_17690 | T2KNB8 | - | 4324335 - 4325816 | 55742.9 |
| susc/raga family tonb-linked outer membrane protein | IZT61_17695 | T2KPJ3 | - | 4325835 - 4328999 | 114768.0 |
| duf5007 domain-containing protein | IZT61_17700 | Not Available | - | 4329035 - 4330063 | 38973.0 |
| hypothetical protein | IZT61_17705 | Not Available | - | 4330075 - 4330755 | 25608.7 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_17710 | T2KPM5 | - | 4330779 - 4332344 | 58820.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.