Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| serine acetyltransferase | IZT61_17615 | Q59967 | - | 4288972 - 4289787 | 30022.9 |
| tigr00341 family protein | IZT61_17620 | Q58091 | + | 4290189 - 4291535 | 50147.7 |
| response regulator transcription factor | IZT61_17625 | Q81JL3 | + | 4292101 - 4292796 | 26534.6 |
| hypothetical protein | IZT61_17630 | Q9LCC2 | + | 4292831 - 4294924 | 79986.8 |
| hypothetical protein | IZT61_17635 | Not Available | - | 4295236 - 4295382 | 5806.74 |
| ig-like domain-containing protein | IZT61_17640 | Q086E4 | + | 4295841 - 4310705 | 500405.0 |
| tetratricopeptide repeat-containing sensor histidine kinase | IZT61_17645 | Q2JWK9 | - | 4311242 - 4313341 | 79300.8 |
| winged helix-turn-helix transcriptional regulator | IZT61_17650 | P9WMI4 | + | 4313717 - 4314046 | 11770.5 |
| hypothetical protein | IZT61_17655 | Not Available | + | 4314093 - 4314560 | 17105.4 |
| s8 family serine peptidase | IZT61_17660 | P11018 | - | 4314752 - 4316320 | 56383.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.