Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| coa-binding protein | IZT61_17565 | Not Available | + | 4276012 - 4276371 | 13477.3 |
| acyloxyacyl hydrolase | IZT61_17570 | Not Available | - | 4276368 - 4277474 | 41219.4 |
| lipid a deacylase lpxr family protein | IZT61_17575 | Not Available | - | 4277476 - 4278435 | 35402.8 |
| 16s ribosomal rna | Not Available | Not Available | + | 4279920 - 4281441 | Not Available |
| Trna-ile | Not Available | Not Available | + | 4281732 - 4281806 | Not Available |
| Trna-ala | Not Available | Not Available | + | 4281895 - 4281971 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | + | 4282387 - 4285263 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 4285403 - 4285514 | Not Available |
| s8 family peptidase | IZT61_17605 | Q45670 | + | 4286181 - 4287944 | 65542.3 |
| cysteine synthase cysm | IZT61_17610 | Q9I526 | - | 4288098 - 4288970 | 31712.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.