Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_17515 | Not Available | + | 4265126 - 4265656 | 20092.6 |
| methylmalonyl-coa mutase | IZT61_17520 | O86028 | + | 4265803 - 4267350 | 57085.0 |
| chromosomal replication initiator protein dnaa | IZT61_17525 | A6GYW8 | + | 4267961 - 4269391 | 53928.2 |
| nudix hydrolase | IZT61_17530 | P54570 | - | 4269558 - 4270112 | 20869.1 |
| hypothetical protein | IZT61_17535 | Not Available | - | 4270151 - 4270537 | 15095.4 |
| tpm domain-containing protein | IZT61_17540 | P55140 | - | 4270731 - 4271519 | 27074.3 |
| tpm domain-containing protein | IZT61_17545 | Not Available | - | 4271516 - 4271965 | 16229.3 |
| lema family protein | IZT61_17550 | A8AVK0 | - | 4272188 - 4272769 | 21185.2 |
| nad(p)/fad-dependent oxidoreductase | IZT61_17555 | Q05627 | + | 4273038 - 4274582 | 56488.1 |
| dinb family protein | IZT61_17560 | Not Available | + | 4275373 - 4275840 | 17606.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.