Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_17465 | Not Available | - | 4255055 - 4256134 | 39517.9 |
| carboxyl-terminal protease | IZT61_17470 | F4KHG6 | - | 4256269 - 4257558 | 47144.6 |
| helix-turn-helix transcriptional regulator | IZT61_17475 | O31943 | + | 4257729 - 4257944 | 8449.16 |
| udp-glucose/gdp-mannose dehydrogenase family protein | IZT61_17480 | O86422 | + | 4258115 - 4259425 | 48154.0 |
| sdr family oxidoreductase | IZT61_17485 | Q8NBZ7 | + | 4259427 - 4260416 | 37519.1 |
| udp-glucose 4-epimerase gale | IZT61_17490 | Q553X7 | + | 4260419 - 4261441 | 37360.2 |
| hypothetical protein | IZT61_17495 | Not Available | + | 4261442 - 4261999 | 21125.9 |
| capsular biosynthesis protein | IZT61_17500 | P96717 | + | 4262248 - 4262985 | 27661.4 |
| abc transporter permease | IZT61_17505 | Q6F813 | - | 4263200 - 4264429 | 43755.0 |
| iron-sulfur cluster assembly accessory protein | IZT61_17510 | P72731 | - | 4264683 - 4265036 | 12783.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.