Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_17415 | P9WER1 | - | 4242472 - 4243422 | 37158.8 |
| glycosyltransferase | IZT61_17420 | Q58457 | - | 4243753 - 4244688 | 36807.8 |
| hypothetical protein | IZT61_17425 | Not Available | - | 4245320 - 4246063 | 27789.5 |
| hypothetical protein | IZT61_17430 | P27126 | + | 4246836 - 4247870 | 40036.8 |
| glycosyltransferase family 4 protein | IZT61_17435 | Q94BX4 | - | 4248138 - 4249253 | 43207.4 |
| alpha-1,2-fucosyltransferase | IZT61_17440 | Q58YV9 | + | 4249333 - 4250190 | 33317.8 |
| glycosyltransferase family 2 protein | IZT61_17445 | Q57287 | + | 4250187 - 4251197 | 39020.9 |
| dmt family transporter | IZT61_17450 | Not Available | + | 4251278 - 4252017 | 28068.7 |
| hypothetical protein | IZT61_17455 | Not Available | - | 4252552 - 4254036 | 55443.8 |
| ricin domain-containing protein | IZT61_17460 | Not Available | - | 4254618 - 4255058 | 16796.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.