Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carotenoid biosynthesis protein | IZT61_17365 | Not Available | + | 4232655 - 4233329 | 25832.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | IZT61_17370 | Q11YY5 | + | 4233342 - 4234190 | 31994.7 |
| fatty acid desaturase | IZT61_17375 | P54972 | + | 4234319 - 4234993 | 26782.6 |
| ferrochelatase | IZT61_17380 | Q6MAW8 | + | 4235520 - 4236530 | 37867.7 |
| gluconokinase | IZT61_17385 | P39208 | + | 4236537 - 4237058 | 19224.0 |
| glycosyltransferase family 92 protein | IZT61_17390 | B9SLR1 | - | 4237270 - 4238247 | 37969.6 |
| stealth cr1 domain-containing protein | IZT61_17395 | Q4K0S9 | + | 4238588 - 4239580 | 39639.2 |
| glycosyltransferase | IZT61_17400 | P71057 | + | 4239585 - 4240367 | 30057.0 |
| capsular polysaccharide synthesis protein | IZT61_17405 | B0Y567 | + | 4240609 - 4241544 | 37250.9 |
| glycosyltransferase family 2 protein | IZT61_17410 | P71059 | + | 4241589 - 4242449 | 33224.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.