Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| virulence protein rhum/fic/doc family protein | IZT61_17315 | Not Available | + | 4223580 - 4224563 | 37664.3 |
| m28 family peptidase | IZT61_17320 | C4JHZ6 | - | 4224565 - 4226268 | 63196.1 |
| doxx family membrane protein | IZT61_17325 | Not Available | - | 4226312 - 4226770 | 16811.2 |
| phenylalanyl-trna synthetase subunit alpha | IZT61_17330 | Not Available | + | 4226962 - 4227072 | 4350.15 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | IZT61_17335 | Q8AA22 | + | 4227281 - 4228693 | 53258.7 |
| hypothetical protein | IZT61_17340 | Not Available | + | 4228775 - 4229176 | 15253.3 |
| duf2807 domain-containing protein | IZT61_17345 | Not Available | - | 4229491 - 4230195 | 24461.7 |
| phosphoribosyltransferase | IZT61_17350 | Q97HA0 | + | 4230324 - 4230830 | 19309.7 |
| lysophospholipid acyltransferase family protein | IZT61_17355 | Not Available | + | 4230968 - 4231591 | 24527.3 |
| glycosyltransferase | IZT61_17360 | Q2FDU4 | + | 4231588 - 4232685 | 41672.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.