Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lipoyl synthase | IZT61_17215 | Q11Q84 | - | 4205133 - 4206026 | 33291.3 |
| sulfatase-like hydrolase/transferase | IZT61_17220 | P15289 | + | 4206222 - 4207544 | 49851.7 |
| single-stranded-dna-specific exonuclease recj | IZT61_17225 | O32044 | + | 4208377 - 4210077 | 63303.1 |
| lps export abc transporter atp-binding protein | IZT61_17230 | P45073 | + | 4210223 - 4210963 | 27772.8 |
| gh3 auxin-responsive promoter family protein | IZT61_17235 | O22190 | + | 4211163 - 4212686 | 58424.9 |
| hypothetical protein | IZT61_17240 | Not Available | + | 4212827 - 4213045 | 8384.83 |
| duf1232 domain-containing protein | IZT61_17245 | O31670 | + | 4213313 - 4213741 | 15881.5 |
| duf2752 domain-containing protein | IZT61_17250 | Not Available | + | 4213725 - 4214045 | 12109.3 |
| hypothetical protein | IZT61_17255 | Not Available | + | 4214048 - 4214521 | 16732.2 |
| brxa/brxb family bacilliredoxin | IZT61_17260 | Q11WG7 | + | 4214626 - 4215036 | 14963.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.