Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_17115 | Not Available | - | 4183637 - 4184149 | 19366.6 |
| hypothetical protein | IZT61_17120 | Not Available | - | 4184241 - 4184417 | 6028.82 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | IZT61_17125 | P0A9L3 | - | 4184776 - 4185552 | 27570.2 |
| nucleoside-diphosphate kinase | IZT61_17130 | A5F9Z6 | - | 4185679 - 4186098 | 15240.8 |
| bifunctional oligoribonuclease/pap phosphatase nrna | IZT61_17135 | Q5SM25 | + | 4186218 - 4187231 | 37462.6 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | IZT61_17140 | P44760 | + | 4187329 - 4188306 | 35334.6 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | IZT61_17145 | O08437 | + | 4188686 - 4189654 | 35457.9 |
| cyth domain-containing protein | IZT61_17150 | A3DIJ8 | - | 4190061 - 4190531 | 18374.6 |
| family 20 glycosylhydrolase | IZT61_17155 | P49008 | - | 4190531 - 4192480 | 73434.3 |
| stas/sec14 domain-containing protein | IZT61_17160 | Not Available | - | 4192811 - 4193191 | 14335.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.