Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ig-like domain-containing protein | IZT61_17065 | Not Available | - | 4171573 - 4174299 | 100345.0 |
| nitroreductase family protein | IZT61_17070 | Q01234 | - | 4174779 - 4175411 | 23101.8 |
| endonuclease/exonuclease/phosphatase family protein | IZT61_17075 | Not Available | - | 4175717 - 4176826 | 42002.5 |
| rhomboid family intramembrane serine protease | IZT61_17080 | O14364 | - | 4176826 - 4177683 | 32004.7 |
| rhomboid family intramembrane serine protease | IZT61_17085 | Q9P7D8 | - | 4177676 - 4178389 | 27061.3 |
| dna mismatch repair endonuclease mutl | IZT61_17090 | Q11Z58 | - | 4178591 - 4180426 | 68319.6 |
| tetratricopeptide repeat protein | IZT61_17095 | Not Available | - | 4180903 - 4181568 | 24351.0 |
| hypothetical protein | IZT61_17100 | Not Available | - | 4181688 - 4182098 | 15644.8 |
| dna replication/repair protein recf | IZT61_17105 | A6H141 | + | 4182205 - 4183308 | 42582.1 |
| duf721 domain-containing protein | IZT61_17110 | A4Q9S3 | + | 4183301 - 4183591 | 11178.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.