Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | IZT61_17015 | Not Available | - | 4160623 - 4161057 | 15809.1 |
| hypothetical protein | IZT61_17020 | Not Available | - | 4161868 - 4162389 | 19924.2 |
| hypothetical protein | IZT61_17025 | Not Available | - | 4162568 - 4163089 | 20008.4 |
| hypothetical protein | IZT61_17030 | Not Available | - | 4163254 - 4163769 | 19256.6 |
| hypothetical protein | IZT61_17035 | Not Available | - | 4163787 - 4164896 | 40898.3 |
| gdsl family lipase | IZT61_17040 | Q5R6X1 | + | 4165081 - 4165740 | 25137.8 |
| hypothetical protein | IZT61_17045 | Not Available | + | 4165803 - 4167002 | 44512.9 |
| tonb-dependent receptor | IZT61_17050 | Not Available | + | 4167058 - 4169382 | 86511.7 |
| duf4249 domain-containing protein | IZT61_17055 | Not Available | + | 4169385 - 4170188 | 29085.2 |
| d-glycerate dehydrogenase | IZT61_17060 | Q9C4M5 | + | 4170533 - 4171492 | 34593.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.