Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_16965 | Not Available | + | 4148651 - 4149514 | 32767.7 |
| helix-turn-helix domain-containing protein | IZT61_16970 | Not Available | + | 4149706 - 4149972 | 10088.4 |
| tetratricopeptide repeat protein | IZT61_16975 | Q8IUR5 | + | 4150446 - 4153574 | 121171.0 |
| hypothetical protein | IZT61_16980 | Not Available | + | 4154212 - 4154655 | 15726.9 |
| phage gp37/gp68 family protein | IZT61_16985 | Not Available | + | 4154774 - 4155532 | 28951.9 |
| three-cys-motif partner protein tcmp | IZT61_16990 | Not Available | - | 4155522 - 4156364 | 31943.4 |
| hypothetical protein | IZT61_16995 | Not Available | + | 4156565 - 4156765 | 7789.33 |
| hypothetical protein | IZT61_17000 | Not Available | - | 4157083 - 4157313 | 9231.85 |
| aaa family atpase | IZT61_17005 | Q60291 | - | 4157948 - 4158961 | 38394.8 |
| duf262 domain-containing protein | IZT61_17010 | Not Available | - | 4158961 - 4160250 | 50525.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.