Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr domain-containing protein | IZT61_16765 | P23485 | + | 4099955 - 4101163 | 45742.4 |
| tonb-dependent receptor | IZT61_16770 | T2KPJ3 | + | 4101435 - 4104659 | 117935.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_16775 | T2KN63 | + | 4104726 - 4106198 | 54816.9 |
| alpha-l-rhamnosidase n-terminal domain-containing protein | IZT61_16780 | P9WF03 | + | 4106258 - 4108630 | 90487.9 |
| histone h1 | IZT61_16785 | Not Available | - | 4109207 - 4109386 | 6669.02 |
| hypothetical protein | IZT61_16790 | Not Available | - | 4109398 - 4109589 | 6998.52 |
| hypothetical protein | IZT61_16795 | Not Available | + | 4109853 - 4110134 | 10169.0 |
| hypothetical protein | IZT61_16800 | Not Available | - | 4110882 - 4111415 | 19873.6 |
| site-specific integrase | IZT61_16805 | Q9KPE9 | - | 4112700 - 4113935 | 48271.3 |
| dmt family transporter | IZT61_16810 | Not Available | + | 4114659 - 4115647 | 34667.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.