Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | IZT61_16715 | Q49117 | + | 4091871 - 4092611 | 25813.9 |
| sdr family oxidoreductase | IZT61_16720 | A0A5B8YU81 | + | 4092726 - 4093472 | 26424.5 |
| sdr family nad(p)-dependent oxidoreductase | IZT61_16725 | P39577 | + | 4093496 - 4094239 | 27041.5 |
| helix-turn-helix transcriptional regulator | IZT61_16730 | P54722 | - | 4094321 - 4095238 | 35439.6 |
| sdr family oxidoreductase | IZT61_16735 | Q071N0 | - | 4095252 - 4095989 | 26561.2 |
| aldo/keto reductase | IZT61_16740 | Q8CG45 | - | 4097096 - 4097353 | 9796.78 |
| dmt family transporter | IZT61_16745 | P28808 | + | 4097682 - 4097936 | 9750.72 |
| arac family transcriptional regulator | IZT61_16750 | Q00753 | - | 4097988 - 4098518 | 20570.7 |
| sdr family nad(p)-dependent oxidoreductase | IZT61_16755 | P25145 | - | 4098684 - 4098830 | 5181.37 |
| sigma-70 family rna polymerase sigma factor | IZT61_16760 | A1TEV0 | + | 4099294 - 4099875 | 22650.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.