Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | IZT61_16665 | Not Available | + | 4084754 - 4085209 | 16938.3 |
| helix-turn-helix transcriptional regulator | IZT61_16670 | P42406 | - | 4085578 - 4085940 | 13877.0 |
| sdr family oxidoreductase | IZT61_16675 | P39315 | + | 4086098 - 4086970 | 32353.9 |
| dmt family transporter | IZT61_16680 | Not Available | + | 4086948 - 4087176 | 8251.1 |
| sdr family nad(p)-dependent oxidoreductase | IZT61_16685 | Q49117 | - | 4087254 - 4087472 | 7441.75 |
| sdr family oxidoreductase | IZT61_16690 | O31680 | - | 4087529 - 4088275 | 26328.3 |
| helix-turn-helix transcriptional regulator | IZT61_16695 | O34533 | + | 4088431 - 4088742 | 12038.7 |
| dmt family transporter | IZT61_16700 | Not Available | + | 4088954 - 4089751 | 30818.1 |
| dmt family transporter | IZT61_16705 | Q65N90 | - | 4089750 - 4090556 | 30040.1 |
| helix-turn-helix transcriptional regulator | IZT61_16710 | Q00753 | + | 4090857 - 4091774 | 35693.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.