Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | IZT61_16615 | P96673 | - | 4077318 - 4077659 | 13226.2 |
| sdr family oxidoreductase | IZT61_16620 | P0CU01 | + | 4077748 - 4078557 | 29958.6 |
| aldehyde reductase | IZT61_16625 | G7IYC1 | + | 4078802 - 4079836 | 38388.2 |
| hypothetical protein | IZT61_16630 | Not Available | + | 4079849 - 4080208 | 13341.4 |
| helix-turn-helix transcriptional regulator | IZT61_16635 | P26993 | + | 4080216 - 4080986 | 29764.7 |
| response regulator transcription factor | IZT61_16640 | P32967 | - | 4081079 - 4081477 | 14727.6 |
| dmt family transporter | IZT61_16645 | Not Available | + | 4081734 - 4082348 | 22789.0 |
| helix-turn-helix transcriptional regulator | IZT61_16650 | P43461 | - | 4082402 - 4083328 | 35920.9 |
| nad(p)h-binding protein | IZT61_16655 | Not Available | - | 4083341 - 4084273 | 34376.4 |
| ywfcy domain-containing protein | IZT61_16660 | Not Available | + | 4084590 - 4084832 | 9698.06 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.