Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system dna-binding domain-containing protein | IZT61_16565 | Not Available | + | 4066942 - 4068978 | 75989.8 |
| hypothetical protein | IZT61_16570 | Not Available | + | 4069008 - 4069430 | 15329.4 |
| m23 family metallopeptidase | IZT61_16575 | Q8K9M4 | + | 4069408 - 4070034 | 23401.1 |
| duf1738 domain-containing protein | IZT61_16580 | P27189 | + | 4070027 - 4071238 | 45756.3 |
| duf4099 domain-containing protein | IZT61_16585 | Not Available | + | 4071247 - 4072047 | 29693.6 |
| hypothetical protein | IZT61_16590 | Not Available | + | 4072507 - 4072824 | 12139.3 |
| hypothetical protein | IZT61_16595 | Not Available | + | 4072850 - 4073713 | 32817.0 |
| protein-export chaperone secb | IZT61_16600 | Q57803 | + | 4074390 - 4074803 | 15442.2 |
| hypothetical protein | IZT61_16605 | Not Available | + | 4074808 - 4075359 | 21528.8 |
| helix-turn-helix domain-containing protein | IZT61_16610 | Not Available | + | 4075822 - 4076175 | 13632.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.