Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| plasmid mobilization relaxosome protein mobc | IZT61_16465 | Not Available | + | 4051162 - 4051572 | 15737.3 |
| relaxase/mobilization nuclease domain-containing protein | IZT61_16470 | Q00191 | + | 4051575 - 4052765 | 44299.1 |
| para family protein | IZT61_16475 | Not Available | + | 4052777 - 4053412 | 23544.8 |
| hypothetical protein | IZT61_16480 | Not Available | + | 4053409 - 4053792 | 14559.8 |
| hypothetical protein | IZT61_16485 | Not Available | + | 4053779 - 4054105 | 12378.9 |
| duf4134 domain-containing protein | IZT61_16490 | Not Available | + | 4054113 - 4054424 | 11382.2 |
| duf4134 domain-containing protein | IZT61_16495 | Not Available | + | 4054458 - 4054769 | 10768.5 |
| duf4133 domain-containing protein | IZT61_16500 | Not Available | + | 4054775 - 4055071 | 10897.8 |
| dmt family transporter | IZT61_16505 | P18004 | + | 4055052 - 4056971 | 72648.5 |
| group ii intron reverse transcriptase/maturase | IZT61_16510 | P19593 | + | 4057573 - 4059237 | 64106.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.