Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | IZT61_16415 | Q8CXF3 | + | 4039032 - 4039778 | 28127.8 |
| susc/raga family tonb-linked outer membrane protein | IZT61_16420 | T2KMI3 | + | 4039780 - 4043010 | 120381.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_16425 | Not Available | + | 4043031 - 4044404 | 51803.7 |
| hypothetical protein | IZT61_16430 | Not Available | - | 4044449 - 4044826 | 13514.8 |
| hypothetical protein | IZT61_16435 | Not Available | - | 4044928 - 4045404 | 18199.8 |
| crp/fnr family transcriptional regulator | IZT61_16440 | Not Available | - | 4045564 - 4046130 | 22292.8 |
| hypothetical protein | IZT61_16445 | Not Available | - | 4046175 - 4046630 | 17404.8 |
| hypothetical protein | IZT61_16450 | Not Available | - | 4046740 - 4047879 | 44767.4 |
| rtec domain-containing protein | IZT61_16455 | Not Available | + | 4048173 - 4049012 | 33139.8 |
| toprim domain-containing protein | IZT61_16460 | Not Available | + | 4049580 - 4050551 | 36191.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.