Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| error-prone dna polymerase | IZT61_16365 | Q8UKK2 | - | 4027138 - 4030368 | 122127.0 |
| dna polymerase y family protein | IZT61_16370 | Q9A3J2 | - | 4030374 - 4031882 | 56939.7 |
| error-prone repair protein imua | IZT61_16375 | Q9A3J1 | - | 4031889 - 4032626 | 27194.8 |
| hypothetical protein | IZT61_16380 | P0DUD6 | - | 4032855 - 4033868 | 38259.4 |
| sos response-associated peptidase family protein | IZT61_16385 | O31916 | - | 4033899 - 4034720 | 31367.2 |
| hypothetical protein | IZT61_16390 | Not Available | - | 4034725 - 4034961 | 8821.62 |
| hypothetical protein | IZT61_16395 | Not Available | + | 4035044 - 4035604 | 21829.2 |
| histidine kinase | IZT61_16400 | P0AD15 | - | 4035887 - 4036555 | 26307.5 |
| response regulator transcription factor | IZT61_16405 | Q82Z76 | - | 4037217 - 4037954 | 28765.2 |
| helix-turn-helix transcriptional regulator | IZT61_16410 | Not Available | - | 4038012 - 4038341 | 12377.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.